FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483908
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGC9750.20148457971349926No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9030.18660571844234855No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8610.17792638270084396No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG7830.16180761632376403No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7560.1562280433470825No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7300.1508551212213892No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5240.1082850459178191No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5030.1039453780470668No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4990.10311877464311398No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)