FastQCFastQC Report
Wed 31 May 2023
EGAF00007935037

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935037
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483908
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17860.369078419864933No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGGTG9420.19466510163088852No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8560.17689312844590294No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA8140.16821379270439835No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7770.1605677112178348No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7470.15436818568818866No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6630.1370095142051795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6600.13638956165221489No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5480.113244666341536No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4940.10208552038817297No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)