FastQCFastQC Report
Wed 31 May 2023
EGAF00007935042

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935042
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488602
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC8400.17191906705252946No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7220.14776853144276939No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6850.1401959058702175No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5850.11972935026872587No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5060.1035607713435475No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)