FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488602
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9190.18808764597770783No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC8500.17396572261267862No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7710.15779714368750025No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6920.14162856476232188No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6350.12996262806947168No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5720.11706869804053197No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5020.10274210911948783No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCGCG5010.10253744356347294No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)