FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935046

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935046
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474480
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC17890.37704434328106556No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15280.3220367560276513No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13550.28557578823132695No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG12070.2543837464171303No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10650.2244562468386444No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10080.21244309559939303No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT9640.20316978587084808No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8520.17956499747091553No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7960.16776260327094925No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGC7000.1475299274995785No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6680.1407857022424549No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6480.13657056145675264No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5780.1218175687067948No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5720.12055302647108414No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5660.11928848423537347No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5130.10811836115326252No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT4810.10137413589613893No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)