FastQCFastQC Report
Wed 31 May 2023
EGAF00007935047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474480
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT34050.7176277187658068No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21720.45776428932726354No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15600.3287809812847749No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15230.3209829708312258No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13490.28431124599561625No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC12240.25796661608497723No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG9630.20295902883156297No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8370.17640364188163885No Hit
GAACGTACCACTGACGGTAAACTGGATCCGCGT7630.16080762097454054No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT6070.12792952284606307No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5900.12434665317821614No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5690.1199207553532288No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5330.11233350193896477No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5320.11212274489967966No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5190.10938290338897319No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5180.10917214634968808No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5110.10769684707469229No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)