FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935048

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935048
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462134
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC18190.3936087801373628No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15050.3256631193549923No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14370.3109487724339694No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG11900.2575010711179009No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10280.222446303453111No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8980.19431593433939073No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT8760.1895554103355304No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7850.1698641519559262No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7380.15969394158404274No Hit
CAGGCCGGTGCGCAGGTTGGTGAATTTAGCAATCGGCAGGC6800.14714346921022906No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6170.13351105956281079No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6150.13307828465336893No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6080.13156357247032247No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5660.1224752993720436No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5220.1129542513643229No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5050.10927566463406718No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4710.10191849117355573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)