FastQCFastQC Report
Sun 21 May 2023
EGAF00007935049

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935049
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462134
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT34600.7487005933344009No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20330.4399156954476407No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20240.43796820835515243No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC14840.3211189828058529No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14670.31744039607559715No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12830.2776251044069469No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC12080.2613960453028775No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG8790.19020457269969315No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7840.16964776450120528No Hit
GAACGTACCACTGACGGTAAACTGGATCCGCGT7130.1542842552160196No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6260.1354585466552991No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5880.12723582337590397No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5350.11576728827569494No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5240.11338702627376475No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5230.11317063881904382No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG4840.10473152808492775No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)