FastQCFastQC Report
Wed 31 May 2023
EGAF00007935058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467712
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCG21250.4543394225506294No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA17000.3634715380405036No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16640.35577449370552816No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15160.3241310892172961No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG13480.2882115489874111No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT11070.23668411330049263No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT9910.21188252599890534No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT9400.20097837985769018No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG9000.19242610837438423No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8400.17959770114942528No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8120.1736111111111111No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7870.16826594143404489No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7130.15244423918992883No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA6970.14902333059660647No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6530.1396158319649699No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6260.13384304871373837No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA5830.12464935686918445No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5820.1244355500821018No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5420.11588327859879584No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC5110.1092552681992337No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT4820.10305487137383688No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4820.10305487137383688No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)