FastQCFastQC Report
Wed 31 May 2023
EGAF00007935060

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935060
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences462340
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA20210.4371241943158714No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG19050.41203443353376307No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14880.3218410693429078No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA14810.32032703205433233No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG13420.29026257732404726No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG9130.19747372063849117No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7760.16784184799065624No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT7130.15421551239347667No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6830.1477267811567245No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6660.14404983345589825No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6520.14102175887874724No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6350.137344811177921No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6280.1358307738893455No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC6220.13453302764199507No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG5870.12696284119911755No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5640.12198814725094087No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5550.12004152787991522No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC5500.11896007267378984No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCG5310.11485054289051347No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACAC4790.10360340874680972No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT4790.10360340874680972No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGC4680.10122420729333391No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG4630.10014275208720855No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)