FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935062

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935062
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484142
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT16490.34060255049138477No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15960.32965534905048516No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG14260.2945416840513733No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT11350.23443535161171725No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT11320.23381569869996818No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT10000.20655097058301075No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG9740.2011806453478525No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9460.19539721817152816No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9020.18630897546587571No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8410.17370936626031205No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8170.1687521429663198No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7510.1551197789078411No Hit
CGGGCGACCGCCACCACGACCACGACCACGACCGCGGCCAC7130.14727084202568666No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7050.14561843426102258No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6940.14334637358460947No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA6940.14334637358460947No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6420.13260572311429292No Hit
TGGGCGGCCGCCACCACGACCGCGACCGCGGCCACGACCAC6230.12868125467321573No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG6120.1264091939968026No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5820.12021266487931227No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5790.11959301196756322No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5540.11442923770298796No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5280.10905891246782969No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5220.10781960664433161No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5160.10658030082083356No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5000.10327548529150538No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTT4890.10100342461509228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)