FastQCFastQC Report
Wed 31 May 2023
EGAF00007935063

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935063
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484142
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG20450.42239673484225704No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT18540.38294549946090195No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG17670.36497556502018No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15990.3302750019622342No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC12460.25736250934643146No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG11520.2379467181116284No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG10620.21935713075915741No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT10280.21233439775933508No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGGGC9050.18692862837762475No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9040.18672207740704172No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9040.18672207740704172No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA8330.17205695849564798No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7780.1606966551135824No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC7680.15863114540775228No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT7230.1493363517315168No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7050.14561843426102258No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6740.13921535417294925No Hit
ATGAGCGACGAAGGTCCGGGTACCGGCCCGGGT6630.13694329349653614No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC6230.12868125467321573No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC6170.12744194884971766No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6150.12702884690855162No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGGGT5690.11752750226173313No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5530.11422268673240495No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5490.11339648285007291No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5430.11215717702657485No Hit
GGTGGTGATAACCATGGCCGTGGCCGTGGCCGC5290.1092654634384127No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA5080.10492789305616948No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5070.10472134208558646No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG4990.10306893432092239No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4950.10224273043859032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)