FastQCFastQC Report
Wed 31 May 2023
EGAF00007935064

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935064
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509868
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCA46230.9067052648920897No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT22950.4501165007413684No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC20000.3922583884456369No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16360.320867361748531No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT12800.25104536860520765No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT12000.23535503306738215No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT10510.2061317831281822No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8510.16690594428361852No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6620.12983752657550582No Hit
CAGCGCGTCACGCTGTTCCGGCACACGAACTTCGAAAGACT6520.12787623463327763No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6320.12395365074882125No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5880.11532396620301726No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTG5160.10120266421897434No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG5100.10002588905363742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)