FastQCFastQC Report
Wed 31 May 2023
EGAF00007935065

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935065
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509868
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCGGTCAGAAAGCCAAATCTAACCCGAAC47540.932398189335279No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT38130.7478406175716068No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC23120.4534506970431563No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC16100.3157680026987377No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14430.28301442726352705No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14020.27497313030039144No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG13400.2628131202585767No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT12550.24614213874963714No Hit
GCCGATAGCCTGGAGCGTGACCTGGATGCCCCA6840.1341523688484078No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5820.11414719103768035No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5680.11140138231856087No Hit
GATGGTTACATCTTCAACCCGAAAGACATCGTA5340.10473298971498506No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)