FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935066

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935066
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478955
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG26470.5526615235251746No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT21430.44743243102170355No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT20160.4209163700138844No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT19300.4029606121660699No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT18260.3812466724431314No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT18030.37644455115825076No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT13990.2920942468499128No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT13720.28645697403722686No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT12750.26620454948794775No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG12060.25179818563330586No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG10840.22632606403524339No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT10210.21317242747230952No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT9500.19834848785376497No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8550.17851363906838846No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG7860.1641072752137466No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7440.15533818417179068No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6730.14051424455324613No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6450.13466818385860885No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT6350.13258030503909551No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC6220.1298660625737282No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC6180.1290309110459229No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5320.11107515319810839No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTT5270.11003121378835173No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT5100.1064818197951791No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGT4980.10397636521176311No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4920.10272363792005511No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)