FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478955
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT34330.7167687987389212No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22410.46789364345293405No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT21980.4589157645290267No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC21220.4430478855007255No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC20770.43365243081291566No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC19660.4104769759163178No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG18670.389806975603136No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT14660.30608303494065203No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC14630.30545667129479803No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT12930.2699627313630717No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG12650.2641166706684344No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT11160.233007276257686No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC10340.2158866699376768No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA10110.21108454865279622No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA10000.20878788195133152No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA8730.18227182094351244No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC8380.17496424507521582No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7340.15325030535227735No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT7020.14656909312983474No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT6710.14009666878934346No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6620.1382175778517815No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG6530.1363384869142195No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT6020.12569030493470157No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC5830.12172333517762629No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA5570.11629485024689168No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5450.11378939566347569No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5180.10815212285078975No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5150.10752575920493575No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG5120.10689939555908175No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5070.1058554561493251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)