FastQCFastQC Report
Wed 31 May 2023
EGAF00007935068

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935068
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483558
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG26740.5529843369357967No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT21930.45351333242341146No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT19710.4076036380330798No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT19470.4026404278287196No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT19110.39519561252217933No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT18710.3869235955149124No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT14300.29572460800979405No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT13770.28476418547516535No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT13130.2715289582635382No Hit
GGCTGGAATGGATTCGGAGTTGCGCGGGCCGGTCGGCAGGG12130.25084891574537077No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG10730.22189685621993638No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT10220.21135003453567103No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8990.18591358223832508No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT8860.18322517671096333No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCT8640.1786755673569665No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT8400.17371235715260633No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8070.16688794312161107No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCAC7200.1488963061308054No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT6950.14372629550126356No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6260.12945706616372804No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGC6040.1249074568097312No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGT5770.119323845329826No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTT5720.11828984320391762No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT5270.10898382407074228No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5180.10712262024410721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)