FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935069

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935069
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483558
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT34970.7231810868603146No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC22270.46054454687958835No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22220.45951054475368003No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC21650.4477229205183246No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT21040.4351080945822425No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG19730.40801723888344316No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC19270.3985044193250862No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC15280.3159910496775981No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT14720.3044102258674244No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT13650.28228258037298526No Hit
TCTGCCTGCAACGATTTCAGCGTTCGTATGCTG12780.26429094338217957No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT11390.2355456842819269No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA11230.2322368774790201No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC10410.2152792426141228No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGTTC9290.19211759499377531No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA8950.18508638053759838No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8910.18425917883687168No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA8300.17164435290078955No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGCAG7460.15427311718552894No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT7380.15261871378407554No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA6830.14124469039908347No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT6720.13896988572208505No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA6190.12800946318745632No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTCGT6020.12449385595936786No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTTTC5980.12366665425864115No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5300.1096042253462873No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG5250.10857022322037894No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5250.10857022322037894No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5020.10381381344120044No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)