FastQCFastQC Report
Wed 31 May 2023
EGAF00007935070

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935070
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences576952
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8050.1395263384129009No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7970.13813974126097145No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7800.13519322231312136No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6590.11422094039018843No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCG6440.11162107073032072No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6190.10728795463054118No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGA6130.1062480067665941No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCA5800.10052829351488513No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)