FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935072

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935072
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494598
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA13700.2769926283567665No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG11910.2408016207101525No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11020.22280720908697568No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8830.1785288254299451No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT8330.16841960541692447No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC7950.16073659820702874No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6820.137889760977602No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6630.13404825737265416No Hit
ATAACAGTCCAGGTTGTCACCGTAAGAAACGCCCAGCAGAT5830.11787350535182106No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)