FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494598
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29430.5950286899663969No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12440.2515173939239544No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA10280.20784556346770508No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8810.1781244566294243No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC8090.1635671798106745No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7000.14152908018228946No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6490.13121767576900836No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT5840.11807568975208149No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5760.11645821454999818No Hit
GCAGCGGGTCGCCTGCCGGGCTATGGCGTCACC5740.11605384574947736No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5480.1107970513427066No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5290.10695554773775874No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTGCA5000.10109220013020674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)