FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453473
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15140.33386772751630195No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7870.1735494726257131No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7810.17222635085220067No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6350.14003038769673168No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5810.12812229173511985No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5660.12481448730133878No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5250.11577315518233722No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5110.11268587104414154No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT4720.1040855795163108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)