FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446130
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT13590.3046197296752068No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG12050.2701006433102459No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG10520.2358057068567458No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT10480.23490910721090263No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT9160.20532131889807906No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG8290.18582027660099074No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT8210.18402707730930445No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG7960.17842332952278483No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7910.1773025799654809No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT7500.16811243359558872No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7450.1669916840382848No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7420.16631923430390244No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT7220.16183623607468675No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6770.15174949005895144No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6600.14793894156411808No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6590.1477147916526573No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG6180.13852464528276512No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG6010.13471409678793175No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG6010.13471409678793175No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5990.13426579696501018No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5980.1340416470535494No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5650.1266446999753435No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5530.1239549010378141No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5530.1239549010378141No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5390.1208168022773631No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGG5150.11543720440230426No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4970.11140250599601013No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC4790.10736780758971601No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC4760.10669535785533366No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4590.1028848093605003No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4550.10198820971465715No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGG4470.10019501042297088No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)