FastQCFastQC Report
Wed 31 May 2023
EGAF00007935079

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935079
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences446130
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21760.4877502073386681No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17990.4032456907179522No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16480.3693990540873736No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT12670.28399793782081456No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC11990.2687557438414812No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT11670.261582946674736No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC10490.2351332571223634No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9240.2071145181897653No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC9110.20420056934077513No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA8890.19926927128863783No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG8670.19433797323650057No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8600.19276892385627506No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG8130.18223387801761817No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA7660.17169883217896129No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7400.16587093448098086No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7240.16228453589760833No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG7070.158473987402775No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG6980.1564566381996279No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6730.1508528904131083No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6730.1508528904131083No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6620.14838724138703965No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6430.14412839306928474No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC6380.1430076435119808No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6180.13852464528276512No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT5820.13045524847017687No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5550.12440320086073565No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG5410.12126510210028467No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5300.11879945307421605No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGTTC5140.11521305449084347No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5010.11229910564185326No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT4960.11117835608454935No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT4920.11028175643870622No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC4720.1057987582094905No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT4720.1057987582094905No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC4720.1057987582094905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)