FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences481325
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA19280.40056095154001975No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16060.3336622863969252No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC15790.3280527709967278No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13760.285877525580429No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC10060.20900638861476134No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9850.2046434321923856No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9770.20298135355529007No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7830.1626759466057238No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7640.15872850984262193No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGG7110.1477172388718641No Hit
GGAGATTTCGCTGTTGTCGGACAGGATTTCCTGAGCTTCTG7060.14667843972367944No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG6900.1433542824494884No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5640.117176543915234No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5330.11073598919648885No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG5330.11073598919648885No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5240.1088661507297564No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA4980.10346439515919598No Hit
GGAGATTTCAGAGTTATCGGACAGAATTTCCTGAGCTTCGG4890.10159455669246352No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)