FastQCFastQC Report
Sun 21 May 2023
EGAF00007935082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483653
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA19910.41165877188810984No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC16850.348390271537652No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC16490.34094691855524517No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT13330.27561082015411875No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC10200.2108950011681929No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA9990.20655304526178891No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA9620.19890293247431529No Hit
GGAGATTTCGCTGTTGTCGGACAGGATTTCCTGAGCTTCTG7880.16292672639268235No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG7630.15775773126601095No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7340.15176169691907215No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGG7200.14886705964813615No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCG6400.1323262752427877No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5960.12322884381984604No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5770.11930040752357579No Hit
TTCCATCGGCTGCTGCGGGCTTACCTGGGTCAGCTGCGGTG5590.11557873103237239No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG5260.10875565746516615No Hit
GGAGATTTCAGAGTTATCGGACAGAATTTCCTGAGCTTCGG5240.10834213785503244No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5100.10544750058409645No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5010.10358666233849474No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCA4970.10275962311822731No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG4950.1023461035080936No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4840.10007174565235818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)