FastQCFastQC Report
Wed 31 May 2023
EGAF00007935086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465718
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16100.3457027643337814No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14990.32186859859399897No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6800.14601110543290147No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5350.11487638442147395No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5330.11444693999373011No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT5050.10843471800531651No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)