FastQCFastQC Report
Wed 31 May 2023
EGAF00007935088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437244
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9050.2069782547044671No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8770.20057450759758855No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8230.18822442389146565No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8090.18502255033802636No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7720.176560455946794No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7400.1692418878246471No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7240.16558260376357364No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7170.16398166698685404No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7110.16260943546395148No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6560.1500306465040115No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA6010.1374518575440715No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5970.13653703652880314No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5920.1353935102597177No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5840.13356386822918095No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5200.11892673198488715No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG4810.1100072270860206No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4770.10909240607075227No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4690.10726276404021554No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4610.10543312200967882No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4420.10108772218715407No Hit

[OK]Adapter Content

Adapter graph