FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437244
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18550.42424824583070325No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15240.3485468068172462No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13400.30646504011490155No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9130.2088078967350038No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8180.18708089762238017No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8180.18708089762238017No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG7750.1772465717082453No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7660.17518822442389145No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7510.1717576456166351No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7450.17038541409373256No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6670.1525464042959995No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6170.14111114160514496No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6120.1399676153360595No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5460.12487306858413151No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5320.12167119503069225No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5230.11961284774633843No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC5100.11663967944671626No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5040.1152674479238137No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4980.11389521640091116No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4740.10840629030930099No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC4640.10611923777113007No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4600.10520441675586172No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)