FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935090

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935090
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences553756
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA19330.3490707098433245No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG16800.30338271729787125No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14000.2528189310815594No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT9610.17354213769241325No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6420.11593553839597222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)