FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555834
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA18710.3366112904212409No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG17840.32095913528139697No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT14320.2576308754052469No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT10180.1831482061190931No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTG6300.11334319239197313No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG5670.10200887315277582No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)