FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935099

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935099
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences644018
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29540.45868283184631486No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21870.3395867817359142No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20820.3232828896086755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13770.21381389961150155No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12910.20046023558347748No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10640.16521277355601863No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9340.14502700235086596No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8480.13167333832284192No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7440.11552472135871979No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7370.11443779521690388No Hit
GACGCCGCGTCCAGCAGCTCTGCAGGTCAGT6740.10465545994056066No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)