FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508477
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17210.33846171999913466No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14430.2837886472741147No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10350.20354902974962485No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9990.19646906349746399No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9340.18368579109772912No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9180.18053913943010205No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7990.15713591765212587No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5680.11170613420076031No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5360.10541283086550621No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)