FastQCFastQC Report
Sun 21 May 2023
EGAF00007935106

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935106
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567955
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19370.3410481464200509No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9150.16110431284168641No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9060.15951968025635835No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8310.1463144087119578No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8080.1422647921050083No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7920.13944766750886955No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7700.13557412118917872No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7590.13363734802933333No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6710.11814316275057003No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6480.11409354614362052No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5880.10352932890810011No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5850.10300111804632409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)