FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935107

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935107
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences567955
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG20670.36393728376367845No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19230.33858316239842945No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12350.217446804764462No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9440.16621035117218794No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9310.1639214374378252No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8820.15529399336215016No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8500.1496597441698726No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8030.14138444066871494No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8020.14120837038145628No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7880.13874338635983485No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7140.125714185102693No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7110.12518597424091696No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6780.11937565476138073No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6270.11039607011118838No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6250.11004392953667104No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6240.10986785924941236No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5750.10124041517373734No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)