FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544426
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17990.33043976591860047No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8550.15704613666503803No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8180.15024998806082002No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8170.15006630836881413No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8150.14969894898480235No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7480.13739240962040755No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7390.13573929239235452No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7390.13573929239235452No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6230.114432448119671No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5960.1094730964355119No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5790.10635054167141171No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5770.10598318228739995No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5530.10157486967925851No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)