FastQCFastQC Report
Sun 21 May 2023
EGAF00007935111

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935111
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences526886
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG89951.707200419065984No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21160.40160490124998577No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14440.27406308005906405No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12720.24141844725424477No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9110.17290267723947875No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8770.1664496684292238No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8490.16113542587960203No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8320.15790892147447455No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7690.14595187573782564No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7390.1402580444346595No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5590.10609505661566258No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)