FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935117

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935117
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences569238
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31690.5567091445054617No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25280.44410246680650267No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG19830.3483604397457654No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18460.32429317789747No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17940.31515815880176656No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14110.24787522969302822No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11360.1995650325522892No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10080.17707883170132704No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10070.1769031582571789No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9980.17532209725984563No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9820.17251132215347537No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9810.17233564870932722No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9300.16337630305777198No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7540.132457776887699No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6940.12191737023881047No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6900.12121467646221791No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6630.11647149347021807No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6530.11471475902873665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)