FastQCFastQC Report
Sun 21 May 2023
EGAF00007935122

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935122
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530644
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT22990.43324714874755954No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC19900.37501601827213726No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19490.3672895575941686No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT16590.3126389820670732No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC15630.29454775706500025No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12500.2355628255478249No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11410.21502174716005457No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11200.2110642916908511No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC10730.2022071294502529No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9670.18223140184379732No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG9540.17978154845809996No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8250.15547146486156446No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG6490.1223042190244307No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6400.12060816668048636No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT6090.11476620860690029No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6000.11307015626295595No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC5730.10798199923112294No Hit
CAGGTCACGCAGACCCACCAGGCGGCAGTTACGTGCTTCGATAC5720.10779354897068469No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5550.10458989454323427No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5340.1006324390740308No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5340.1006324390740308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)