FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences530644
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74871.410927099901252No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA45170.8512298263996201No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25710.4845056195867663No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA22280.4198671802564431No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20040.3776543219182729No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG16240.3060432229517341No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13700.2581768568004161No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11610.21879075236881976No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10690.2014533284084999No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9930.1871311086151921No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8280.15603681564287922No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6530.12305802006618374No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC6370.12004281589917158No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6330.11928901485741854No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6050.11401240756514724No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5990.11288170600251769No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5910.11137410391901162No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC5810.10948960131462902No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5800.10930115105419076No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5730.10798199923112294No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5480.10327074272016644No Hit
GGTCACCACTATGACGGCGTTGCCATGCAGT5420.10214004115753689No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5410.10195159089709863No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT5400.10176314063666035No Hit

[OK]Adapter Content

Adapter graph