FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510358
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG74921.4679891370371387No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31110.6095721042875786No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13480.26412831776909546No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12490.24473016980237403No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG10390.20358258320629835No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG8560.16772540060114666No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7780.15244201129403281No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6210.12167929179125242No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6090.11932800112861952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)