FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007935131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511267
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT53341.043290492052098No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21710.42463135700133203No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17760.3473723123143094No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG13720.26835293496353174No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13610.26620141726338686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10210.1996999610770889No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9860.19285422294026408No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9510.18600848480343932No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8940.17485971126632463No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8480.16586245542935493No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8300.16234179010184502No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7840.1533445342648753No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7760.15177979411931536No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5770.11285688299851156No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5670.1109009578165616No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5570.10894503263461167No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5460.10679351493446672No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)