FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487253
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG73081.4998368404093971No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49851.023082464346038No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21380.438786421017418No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG12390.25428268271308746No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12160.24956234235602448No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9020.18511943487264315No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8560.17567875415851725No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8440.173215967885267No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8300.1703427172331417No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8010.16439098373945363No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7950.16315959060282853No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7720.15843925024576555No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7300.1498194982893897No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5590.11472479389557375No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5460.112056775432886No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5240.10754166726526056No Hit
GGCGCCGAAACCGAAGAAGGTGGTGACGATC5000.10261609471876006No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4950.10158993377157248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)