FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451472
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15440.3419924159194812No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7790.17254669171067086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7650.1694457242088103No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7620.1687812311726973No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5850.12957614204203138No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5290.11717227203458909No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4790.10609738809937272No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4730.10476840202714675No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4640.10277492291880781No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)