FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935141

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935141
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429692
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62391.4519702484570343No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7290.16965640505292162No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG7130.16593280768550497No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6790.15802016327974455No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG5440.1266023104921665No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5160.12008601509918733No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4600.107053424313229No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4300.10007167924932278No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)