FastQCFastQC Report
Wed 31 May 2023
EGAF00007935161

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935161
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465677
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27880.5986982393375666No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7640.16406221479695154No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7330.15740524011278204No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6280.1348574226341434No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6100.13099208249494823No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5060.10865900613515377No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4830.10371996040173768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)