FastQCFastQC Report
Wed 31 May 2023
EGAF00007935167

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935167
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435162
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59931.3771882655195076No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA41040.9430970535111062No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT29920.6875600351133601No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25480.5855290673358428No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA18820.4324826156695667No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA16460.3782499391031386No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA15570.35779778565223985No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12920.2969009242534964No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11290.25944360950634476No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11000.2527794246740294No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA10630.244276844025903No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10100.23209747174615433No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9790.2249736879598862No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8630.1983169486306249No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8300.19073356589040402No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8010.1840693810580887No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7430.17074101139345807No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7240.16637482133090664No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG7200.1654556234230011No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7070.16246823022230802No Hit
CCGCTGCCGCCGGCAACGCTGACCGTTCCGC7040.16177883179137884No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6830.15695304277487465No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC6690.15373585009720517No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6640.15258685271232322No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6140.14109687886350372No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6080.13971808200164537No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG6040.1387988840937398No Hit
GCCAACTACATCGTCCGTCAGAGCCGCGGTG5790.13305389716933005No Hit
GAACTGCTGATGAAGGACCCGAACTACCAGC5710.13121550135351892No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5660.13006650396863698No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA5510.12661951181399111No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5280.12133412384353413No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4650.10685675679402154No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4600.1057077594091396No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA4440.10203096777751733No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC4370.1004223714386826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)