FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007935170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences442377
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG12110.27374840916232085No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9980.22559943215854353No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7050.15936633233644606No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5840.1320140965737369No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5720.12930147815098886No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5580.12613675665778284No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5030.11370392222018776No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT4830.10918289151560773No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4750.10737447923377572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)