FastQCFastQC Report
Wed 31 May 2023
EGAF00007935175

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935175
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430107
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG59541.3843066957757024No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG11420.26551532525627347No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10320.23994029392686006No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6930.1611226973753043No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6290.14624267914728195No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5870.13647766718514232No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4440.10323012645690492No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)