FastQCFastQC Report
Wed 31 May 2023
EGAF00007935176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007935176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences458119
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA31170.6803909028003641No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT30530.6664207334775463No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA30120.657471093755116No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC25640.559679908495391No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC22130.4830622611155617No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG19140.41779537631052194No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC17830.3892001859778791No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA16980.37064605484601165No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG16270.35514789825351056No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15440.3370303349129811No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG15080.32917211466889607No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG14440.3152019453460782No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC13910.3036328988756197No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13840.30210491160593644No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13040.2846421999524141No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG12730.2778753991866742No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT12700.2772205474996671No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA12490.2726365856906175No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG12160.2654332171335395No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12050.26303209428118024No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11760.25670186130677836No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11450.24993506054103845No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11060.24142198860994635No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG10630.23203578109617806No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10530.2298529421394878No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10260.22395927695642398No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT10040.21915703125170533No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9560.20867940425959192No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8760.1912166926060696No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG8360.18248533677930845No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8200.17899279444860397No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7600.1658957607084622No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7260.15847410825571523No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6490.1416662482892No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5940.12966063402740335No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5940.12966063402740335No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5840.12747779507071305No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG5740.12529495611402278No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5680.12398525274000859No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5620.12267554936599442No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT5520.12049271040930415No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5480.11961957482662802No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT5260.11481732912190937No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4920.10739567666916239No Hit
CATGTCGATAACCGCGCGACGAGCTGCGCCGTTGCTCATGTTTA4900.10695910887782431No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4850.10586768939947917No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG4650.1015020114860986No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4590.10019230811208442No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)